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Demonstration of Microscale Projection Experiments - Chemistry en miniature

Test for Deoxyribose in DNA

Dische Reaction

Peter Keusch




German version




Material:
Cells of the thymus gland of the calf

Note: Animal cells like thymus and testes are a rich source of DNA. Thymus cells of the calf contain a large nucleus. The membranes of the cells and nuclei are lysed by treating with a surface-active agent (sodium dodecyl sulfate). When the membranes are disrupted the DNA of the nucleus can be isolated.


Chemicals:
saturated solution of sodium dodecyl sulfate
conc. sulfuric acid
1 M sulfuric acid
2 M sulfuric acid
DNA from herring sperm
RNA from yeast
DISCHE REAGENT:  1 g of diphenylamine is dissolved in 2.5 mL of concentrated H2SO4. The solution is filled up to 100 mL with glacial acetic acid.


Hazards and safety precautions:

Conc. sulfuric acid is highly toxic. Causes severe burns. May be fatal if swallowed. May cause cancer through inhalation. Very destructive of mucous membranes.
Diphenylamine is toxic. Possible mutagen. Possible teratogen. Harmful in contact with skin, and if swallowed or inhaled. Irritant.

Safety glasses and protective gloves should be worn. Good ventilation required. DISCHE REAGENT should be prepared in a fume hood!


Preparation of the experiment:

10 g of thymus placed into approx. 40 mL of tap water are cut finely with scissors. The suspension is filtered through a filter consisting of two layers of gauze. While stirring the filtrate, sodium dodecyl sulfate is added, until the filtrate becomes clear and viscous. The viscosity is caused by the liberated DNA. 10 mL dilute HCl are added to the viscous solution with stirring in order to separate the simultaneously formed proteins from the DNA. The precipitation of roughly cleaned DNA is filtered immediately and will be used for the test reactions. However, at first the DNA must be hydrolyzed. The precipitated DNA is dissolved in 2 M H2SO4 and the solution is heated for approx. 15 minutes in a boiling water bath.


Experimental procedure:

Three test tubes are set up as shown in the table below.

Test tube 1 0.5 mL of DNA hydrolysate from thymus
Test tube 2   0.5 mL of DNA solution (a few mg of DNA dissolved in 1 M H2SO4)  
Test tube 3 0.5 mL of RNA solution (a few mg of RNA dissolved in 1 M H2SO4)


All three samples are mixed with 1 mL of DISCHE REAGENT and are placed afterwards for 5 - 10 minutes in a boiling water-bath.










Results:

Foto
Test tube 1 light blue
  (Turbidity caused by insoluble portions of the hydrolyzate)  
Test tube 2 blue
Test tube 3 no color change


Discussion:

· DNA and RNA are nucleic acids made of nucleotide subunits. One major difference between DNA and RNA is their sugar: DNA contains deoxyribose, whereas RNA contains ribose. DNA can be identified chemically with the Dische diphenylamine test. The reaction between the Dische reagent and 2-deoxypentose results in the development of a blue color. The reaction depends on the conversion of the pentose to w-hydroxylaevulinic aldehyde which then reacts with diphenylamine to give a a blue colored complex (test tube 1 and 2). The intensity of the blue color is proportional to the concentration of DNA. Dische reagent does not react with the ribose sugar in RNA and does not form a blue-colored complex (test tube 3).




The equations above are taken from
Biochemisches Grundpraktikum (Ruhr-Universität Bochum)


A note concerning the experiment (test tube 2) with DNA. The color becomes rapidly intense and thus less translucent.


General experimental instructions and index of experiments






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