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Publications

Our facility has contributed to more than 150 peer-reviewed publications.

 

2017

 

Chen J, Strieder N, Krohn NG, Cyprys P, Sprunck S, Engelmann JC, Dresselhaus T. 2017. Zygotic Genome Activation Occurs Shortly after Fertilization in Maize. The Plant cell 29: 2106-2125.

 

Gasso P, Mas S, Rodriguez N, Boloc D, Garcia-Cerro S, Bernardo M, Lafuente A, Parellada E. 2017. Microarray gene-expression study in fibroblast and lymphoblastoid cell lines from antipsychotic-naive first-episode schizophrenia patients. Journal of psychiatric research 95: 91-101.

 

Gerl K, Steppan D, Fuchs M, Wagner C, Willam C, Kurtz A, Kurt B. 2017. Activation of Hypoxia Signaling in Stromal Progenitors Impairs Kidney Development. The American journal of pathology 187: 1496-1511.

 

Gessner DK, Winkler A, Koch C, Dusel G, Liebisch G, Ringseis R, Eder K. 2017. Analysis of hepatic transcript profile and plasma lipid profile in early lactating dairy cows fed grape seed and grape marc meal extract. BMC genomics 18: 253.

 

Gharun K, Senges J, Seidl M, Losslein A, Kolter J, Lohrmann F, Fliegauf M, Elgizouli M, Vavra M, Schachtrup K et al. 2017. Mycobacteria exploit nitric oxide-induced transformation of macrophages into permissive giant cells. EMBO Rep 18: 2144-2159.

 

Grubler B, Merendino L, Twardziok SO, Mininno M, Allorent G, Chevalier F, Liebers M, Blanvillain R, Mayer KFX, Lerbs-Mache S et al. 2017. Light and Plastid Signals Regulate Different Sets of Genes in the Albino Mutant Pap7-1. Plant physiology 175: 1203-1219.

 

Hagemeyer N, Hanft KM, Akriditou MA, Unger N, Park ES, Stanley ER, Staszewski O, Dimou L, Prinz M. 2017. Microglia contribute to normal myelinogenesis and to oligodendrocyte progenitor maintenance during adulthood. Acta neuropathologica 134: 441-458.

 

Hennenberg EM, Eyking A, Reis H, Cario E. 2017. MDR1A deficiency restrains tumor growth in murine colitis-associated carcinogenesis. PLoS One 12: e0180834.

 

Kaser-Eichberger A, Trost A, Strohmaier C, Bogner B, Runge C, Bruckner D, Hohberger B, Junemann A, Kofler B, Reitsamer HA et al. 2017. Distribution of the neuro-regulatory peptide galanin in the human eye. Neuropeptides 64: 85-93.

 

Leist M, Sunder CA, Drube S, Zimmermann C, Geldmacher A, Metz M, Dudeck A, Maurer M. 2017. Membrane-bound stem cell factor is the major but not only driver of fibroblast-induced murine skin mast cell differentiation. Experimental dermatology 26: 255-262.

 

Mondragon-Palomino M, Stam R, John-Arputharaj A, Dresselhaus T. 2017. Diversification of defensins and NLRs in Arabidopsis species by different evolutionary mechanisms. BMC evolutionary biology 17: 255.

 

Muller HM, Schafer N, Bauer H, Geiger D, Lautner S, Fromm J, Riederer M, Bueno A, Nussbaumer T, Mayer K et al. 2017. The desert plant Phoenix dactylifera closes stomata via nitrate-regulated SLAC1 anion channel. The New phytologist 216: 150-162.

 

Pohl R, Haberl EM, Rein-Fischboeck L, Zimny S, Neumann M, Aslanidis C, Schacherer D, Krautbauer S, Eisinger K, Weiss TS et al. 2017. Hepatic chemerin mRNA expression is reduced in human nonalcoholic steatohepatitis. European journal of clinical investigation 47: 7-18.

 

Safronov O, Kreuzwieser J, Haberer G, Alyousif MS, Schulze W, Al-Harbi N, Arab L, Ache P, Stempfl T, Kruse J et al. 2017. Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm). PLoS One 12: e0177883.

 

Schuler-Toprak S, Moehle C, Skrzypczak M, Ortmann O, Treeck O. 2017. Effect of estrogen receptor beta agonists on proliferation and gene expression of ovarian cancer cells. BMC cancer 17: 319.

 

Szczyrba J, Jung V, Beitzinger M, Nolte E, Wach S, Hart M, Sapich S, Wiesehofer M, Taubert H, Wennemuth G et al. 2017. Analysis of Argonaute Complex Bound mRNAs in DU145 Prostate Carcinoma Cells Reveals New miRNA Target Genes. Prostate cancer 2017: 4893921.

 

Tautenhahn HM, Bruckner S, Uder C, Erler S, Hempel M, von Bergen M, Brach J, Winkler S, Pankow F, Gittel C et al. 2017. Mesenchymal stem cells correct haemodynamic dysfunction associated with liver injury after extended resection in a pig model. Scientific reports 7: 2617.

 

Tay TL, Mai D, Dautzenberg J, Fernandez-Klett F, Lin G, Sagar, Datta M, Drougard A, Stempfl T, Ardura-Fabregat A et al. 2017. A new fate mapping system reveals context-dependent random or clonal expansion of microglia. Nature neuroscience 20: 793-803.

 

Wroblewski M, Bauer R, Cubas Cordova M, Udonta F, Ben-Batalla I, Legler K, Hauser C, Egberts J, Janning M, Velthaus J et al. 2017. Mast cells decrease efficacy of anti-angiogenic therapy by secreting matrix-degrading granzyme B. Nat Commun 8: 269.

 

2016

 

Beier DR, T.; Munthe, S.; Winther Kristensen, B.; Beier, CP. 2016. Metabolic challenge of proneural glioblastoma cancer stem cell lines does not induce a mesenchymal transformation in vitro. Int J Clin Exp Pathol 9(7): 6724-6737.

 

Blanc P, Moro-Sibilot L, Barthly L, Jagot F, This S, de Bernard S, Buffat L, Dussurgey S, Colisson R, Hobeika E et al. 2016. Mature IgM-expressing plasma cells sense antigen and develop competence for cytokine production upon antigenic challenge. Nat Commun 7: 13600.

 

Hagemeyer N, Kierdorf K, Frenzel K, Xue J, Ringelhan M, Abdullah Z, Godin I, Wieghofer P, Costa Jordao MJ, Ulas T et al. 2016. Transcriptome-based profiling of yolk sac-derived macrophages reveals a role for Irf8 in macrophage maturation. The EMBO journal 35: 1730-1744.

 

Han S, Li D, Trost E, Mayer KF, Vlot AC, Heller W, Schmid M, Hartmann A, Rothballer M. 2016. Systemic Responses of Barley to the 3-hydroxy-decanoyl-homoserine Lactone Producing Plant Beneficial Endophyte Acidovorax radicis N35. Frontiers in plant science 7: 1868.

 

Hantel C, Ozimek A, Lira R, Ragazzon B, Jackel C, Frantsev R, Reincke M, Bertherat J, Mussack T, Beuschlein F. 2016. TNF alpha signaling is associated with therapeutic responsiveness to vascular disrupting agents in endocrine tumors. Molecular and cellular endocrinology 423: 87-95.

 

Hoja S, Schulze M, Rehli M, Proescholdt M, Herold-Mende C, Hau P, Riemenschneider MJ. 2016. Molecular dissection of the valproic acid effects on glioma cells. Oncotarget 7: 62989-63002.

 

Klein A, Schrader L, Gil R, Manzano-Marin A, Florez L, Wheeler D, Werren JH, Latorre A, Heinze J, Kaltenpoth M et al. 2016. A novel intracellular mutualistic bacterium in the invasive ant Cardiocondyla obscurior. Isme j 10: 376-388.

 

Mas S, Gasso P, Boloc D, Rodriguez N, Marmol F, Sanchez J, Bernardo M, Lafuente A. 2016. Network analysis of gene expression in mice provides new evidence of involvement of the mTOR pathway in antipsychotic-induced extrapyramidal symptoms. Pharmacogenomics J 16: 293-300.

 

Moeckel S, Vollmann-Zwerenz A, Proescholdt M, Brawanski A, Riemenschneider MJ, Bogdahn U, Bosserhoff AK, Spang R, Hau P. 2016. Validation Study: Response-Predictive Gene Expression Profiling of Glioma Progenitor Cells In Vitro. PLoS One 11: e0151312.

 

Papsdorf KS, S.; Richter, G.; Richter, K. 2016. Construction and evaluation of yeast expression networks by database-guided predictions. Microbial Cell 3: 236-247.

 

Riemke P, Czeh M, Fischer J, Walter C, Ghani S, Zepper M, Agelopoulos K, Lettermann S, Gebhardt ML, Mah N et al. 2016. Myeloid leukemia with transdifferentiation plasticity developing from T-cell progenitors. The EMBO journal 35: 2399-2416.

 

Ringseis R, Windisch W, Eder K. 2016. Transcript profiling in the liver of early-lactating dairy cows fed conjugated linoleic acid. Genom Data 10: 101-103.

 

Rundberg Nilsson A, Soneji S, Adolfsson S, Bryder D, Pronk CJ. 2016. Human and Murine Hematopoietic Stem Cell Aging Is Associated with Functional Impairments and Intrinsic Megakaryocytic/Erythroid Bias. PLoS One 11: e0158369.

 

Schuler-Toprak S, Haring J, Inwald EC, Moehle C, Ortmann O, Treeck O. 2016. Agonists and knockdown of estrogen receptor beta differentially affect invasion of triple-negative breast cancer cells in vitro. BMC cancer 16: 951.

 

Sitnik KM, Wendland K, Weishaupt H, Uronen-Hansson H, White AJ, Anderson G, Kotarsky K, Agace WW. 2016. Context-Dependent Development of Lymphoid Stroma from Adult CD34(+) Adventitial Progenitors. Cell reports 14: 2375-2388.

 

Voller D, Linck L, Bruckmann A, Hauptmann J, Deutzmann R, Meister G, Bosserhoff AK. 2016. Argonaute Family Protein Expression in Normal Tissue and Cancer Entities. PLoS One 11: e0161165.

 

2015

 

Bellutti F, Kauer M, Kneidinger D, Lion T, Klein R. 2015. Identification of RISC-associated adenoviral microRNAs, a subset of their direct targets, and global changes in the targetome upon lytic adenovirus 5 infection. Journal of virology 89: 1608-1627.

 

Beltran-Debon R, Rodriguez-Gallego E, Fernandez-Arroyo S, Senan-Campos O, Massucci FA, Hernandez-Aguilera A, Sales-Pardo M, Guimera R, Camps J, Menendez JA et al. 2015. The acute impact of polyphenols from Hibiscus sabdariffa in metabolic homeostasis: an approach combining metabolomics and gene-expression analyses. Food Funct 6: 2957-2966.

 

Breitenbach JS, Rinnerthaler M, Trost A, Weber M, Klausegger A, Gruber C, Bruckner D, Reitsamer HA, Bauer JW, Breitenbach M. 2015. Transcriptome and ultrastructural changes in dystrophic Epidermolysis bullosa resemble skin aging. Aging 7: 389-411.

 

Brunner SM, Rubner C, Kesselring R, Martin M, Griesshammer E, Ruemmele P, Stempfl T, Teufel A, Schlitt HJ, Fichtner-Feigl S. 2015. Tumor-infiltrating, interleukin-33-producing effector-memory CD8(+) T cells in resected hepatocellular carcinoma prolong patient survival. Hepatology (Baltimore, Md) 61: 1957-1967.

 

Chapman KZ, Ge R, Monni E, Tatarishvili J, Ahlenius H, Arvidsson A, Ekdahl CT, Lindvall O, Kokaia Z. 2015. Inflammation without neuronal death triggers striatal neurogenesis comparable to stroke. Neurobiology of disease 83: 1-15.

 

Diakopoulos KN, Lesina M, Wormann S, Song L, Aichler M, Schild L, Artati A, Romisch-Margl W, Wartmann T, Fischer R et al. 2015. Impaired autophagy induces chronic atrophic pancreatitis in mice via sex- and nutrition-dependent processes. Gastroenterology 148: 626-638.e617.

 

Dietzel L, Glasser C, Liebers M, Hiekel S, Courtois F, Czarnecki O, Schlicke H, Zubo Y, Borner T, Mayer K et al. 2015. Identification of Early Nuclear Target Genes of Plastidial Redox Signals that Trigger the Long-Term Response of Arabidopsis to Light Quality Shifts. Molecular plant 8: 1237-1252.

 

Engelmann JC, Amann T, Ott-Rotzer B, Nutzel M, Reinders Y, Reinders J, Thasler WE, Kristl T, Teufel A, Huber CG et al. 2015. Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFkappaB Signaling in Hepatocellular Carcinoma. PLoS computational biology 11: e1004293.

 

Erny D, Hrabe de Angelis AL, Jaitin D, Wieghofer P, Staszewski O, David E, Keren-Shaul H, Mahlakoiv T, Jakobshagen K, Buch T et al. 2015. Host microbiota constantly control maturation and function of microglia in the CNS. Nature neuroscience 18: 965-977.

 

Geels MJ, Thogersen RL, Guzman CA, Ho MM, Verreck F, Collin N, Robertson JS, McConkey SJ, Kaufmann SH, Leroy O. 2015. TRANSVAC research infrastructure - Results and lessons learned from the European network of vaccine research and development. Vaccine 33: 5481-5487.

 

Heiseke AF, Jeuk BH, Markota A, Straub T, Lehr HA, Reindl W, Krug AB. 2015. IRAK1 Drives Intestinal Inflammation by Promoting the Generation of Effector Th Cells with Optimal Gut-Homing Capacity. Journal of immunology (Baltimore, Md : 1950) 195: 5787-5794.

 

Heller G, Rommer A, Steinleitner K, Etzler J, Hackl H, Heffeter P, Tomasich E, Filipits M, Steinmetz B, Topakian T et al. 2015. EVI1 promotes tumor growth via transcriptional repression of MS4A3. J Hematol Oncol 8: 1-14.

 

Hoffmann CJ, Harms U, Rex A, Szulzewsky F, Wolf SA, Grittner U, Lattig-Tunnemann G, Sendtner M, Kettenmann H, Dirnagl U et al. 2015. Vascular signal transducer and activator of transcription-3 promotes angiogenesis and neuroplasticity long-term after stroke. Circulation 131: 1772-1782.

 

Hunten S, Kaller M, Drepper F, Oeljeklaus S, Bonfert T, Erhard F, Dueck A, Eichner N, Friedel CC, Meister G et al. 2015. p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses. Molecular & cellular proteomics : MCP 14: 2609-2629.

 

Karlic H, Thaler R, Gerner C, Grunt T, Proestling K, Haider F, Varga F. 2015. Inhibition of the mevalonate pathway affects epigenetic regulation in cancer cells. Cancer Genet 208: 241-252.

 

Mas S, Gasso P, Parellada E, Bernardo M, Lafuente A. 2015. Network analysis of gene expression in peripheral blood identifies mTOR and NF-kappaB pathways involved in antipsychotic-induced extrapyramidal symptoms. Pharmacogenomics J 15: 452-460.

 

Matsuo M, Johnson JM, Hieno A, Tokizawa M, Nomoto M, Tada Y, Godfrey R, Obokata J, Sherameti I, Yamamoto YY et al. 2015. High REDOX RESPONSIVE TRANSCRIPTION FACTOR1 Levels Result in Accumulation of Reactive Oxygen Species in Arabidopsis thaliana Shoots and Roots. Molecular plant 8: 1253-1273.

 

Miro J, Laaref AM, Rofidal V, Lagrafeuille R, Hem S, Thorel D, Mechin D, Mamchaoui K, Mouly V, Claustres M et al. 2015. FUBP1: a new protagonist in splicing regulation of the DMD gene. Nucleic acids research 43: 2378-2389.

 

Rein-Fischboeck L, Krautbauer S, Eisinger K, Pohl R, Meier EM, Weiss TS, Buechler C. 2015. Hepatic scavenger receptor BI is associated with type 2 diabetes but unrelated to human and murine non-alcoholic fatty liver disease. Biochemical and biophysical research communications 467: 377-382.

 

Scholz R, Sobotka M, Caramoy A, Stempfl T, Moehle C, Langmann T. 2015. Minocycline counter-regulates pro-inflammatory microglia responses in the retina and protects from degeneration. Journal of neuroinflammation 12: 209.

 

Schrader L, Simola DF, Heinze J, Oettler J. 2015. Sphingolipids, Transcription Factors, and Conserved Toolkit Genes: Developmental Plasticity in the Ant Cardiocondyla obscurior. Molecular biology and evolution 32: 1474-1486.

 

Spichiger C, Torres-Farfan C, Galdames HA, Mendez N, Alonso-Vazquez P, Richter HG. 2015. Gestation under chronic constant light leads to extensive gene expression changes in the fetal rat liver. Physiological genomics 47: 621-633.

 

Stangl H, Springorum HR, Muschter D, Grassel S, Straub RH. 2015. Catecholaminergic-to-cholinergic transition of sympathetic nerve fibers is stimulated under healthy but not under inflammatory arthritic conditions. Brain, behavior, and immunity 46: 180-191.

 

Szulzewsky F, Pelz A, Feng X, Synowitz M, Markovic D, Langmann T, Holtman IR, Wang X, Eggen BJ, Boddeke HW et al. 2015. Glioma-Associated Microglia/Macrophages Display an Expression Profile Different from M1 and M2 Polarization and Highly Express Gpnmb and Spp1. PLoS One 10: e0116644.

 

Tausendschön M, Rehli M, Dehne N, Schmidl C, Döring C, Hansmann M-L, Brüne B. 2015. Genome-wide identification of hypoxia-inducible factor-1 and -2 binding sites in hypoxic human macrophages alternatively activated by IL-10. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1849: 10-22.

 

Thaler R, Sturmlechner I, Spitzer S, Riester SM, Rumpler M, Zwerina J, Klaushofer K, van Wijnen AJ, Varga F. 2015. Acute-phase protein serum amyloid A3 is a novel paracrine coupling factor that controls bone homeostasis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 29: 1344-1359.

 

Vahabi K, Sherameti I, Bakshi M, Mrozinska A, Ludwig A, Oelmüller R. 2015. Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction. Genomics Data 6: 16-18.

 

Vahabi K, Sherameti I, Bakshi M, Mrozinska A, Ludwig A, Reichelt M, Oelmuller R. 2015. The interaction of Arabidopsis with Piriformospora indica shifts from initial transient stress induced by fungus-released chemical mediators to a mutualistic interaction after physical contact of the two symbionts. BMC plant biology 15: 58.

 

von Wyschetzki K, Rueppell O, Oettler J, Heinze J. 2015. Transcriptomic Signatures Mirror the Lack of the Fecundity/Longevity Trade-Off in Ant Queens. Molecular biology and evolution 32: 3173-3185.

 

Weber S, Hofmann A, Herms S, Hoffmann P, Doerfler W. 2015. Destabilization of the human epigenome: consequences of foreign DNA insertions. Epigenomics 7: 745-755.

 

2014

 

Albert TK, Rigault C, Eickhoff J, Baumgart K, Antrecht C, Klebl B, Mittler G, Meisterernst M. 2014. Characterization of molecular and cellular functions of the cyclin-dependent kinase CDK9 using a novel specific inhibitor. British journal of pharmacology 171: 55-68.

 

Alsharafa K, Vogel MO, Oelze ML, Moore M, Stingl N, Konig K, Friedman H, Mueller MJ, Dietz KJ. 2014. Kinetics of retrograde signalling initiation in the high light response of Arabidopsis thaliana. Philosophical transactions of the Royal Society of London Series B, Biological sciences 369: 20130424.

 

Daussy C, Faure F, Mayol K, Viel S, Gasteiger G, Charrier E, Bienvenu J, Henry T, Debien E, Hasan UA et al. 2014. T-bet and Eomes instruct the development of two distinct natural killer cell lineages in the liver and in the bone marrow. The Journal of experimental medicine 211: 563-577.

 

de Jel MM, Engelmann JC, Kunz M, Schiffner S, Kuphal S, Bosserhoff AK. 2014. Transcriptome sequencing of melanocytic nevi and melanomas from Grm1 transgenic mice to determine melanoma driver mutations. Pigment cell & melanoma research 27: 678-680.

 

Dey S, Wenig M, Langen G, Sharma S, Kugler KG, Knappe C, Hause B, Bichlmeier M, Babaeizad V, Imani J et al. 2014. Bacteria-Triggered Systemic Immunity in Barley Is Associated with WRKY and ETHYLENE RESPONSIVE FACTORs But Not with Salicylic Acid.  166: 2133-2151.

 

Dorn C, Engelmann JC, Saugspier M, Koch A, Hartmann A, Muller M, Spang R, Bosserhoff A, Hellerbrand C. 2014. Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory investigation; a journal of technical methods and pathology 94: 394-408.

 

Durr J, Lolas IB, Sorensen BB, Schubert V, Houben A, Melzer M, Deutzmann R, Grasser M, Grasser KD. 2014. The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis. Nucleic acids research 42: 4332-4347.

 

Engelmann JC, Kunz M, Schiffner S, Kuphal S, Bosserhoff AK. 2014. Transcriptome sequencing of melanocytic nevi and melanomas from Grm1 transgenic mice to determine melanoma driver mutations. Pigment cell & melanoma research.

 

Galdames HA, Torres-Farfan C, Spichiger C, Mendez N, Abarzua-Catalan L, Alonso-Vazquez P, Richter HG. 2014. Impact of gestational chronodisruption on fetal cardiac genomics. Journal of Molecular and Cellular Cardiology 66: 1-11.

 

Glasser C, Haberer G, Finkemeier I, Pfannschmidt T, Kleine T, Leister D, Dietz KJ, Hausler RE, Grimm B, Mayer KF. 2014. Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana Reveals a Core Module of Genes Embedded in Complex Cellular Signaling Networks. Molecular plant 7: 1167-1190.

 

Kandasamy M, Lehner B, Kraus S, Sander PR, Marschallinger J, Rivera FJ, Trumbach D, Ueberham U, Reitsamer HA, Strauss O et al. 2014. TGF-beta signalling in the adult neurogenic niche promotes stem cell quiescence as well as generation of new neurons. Journal of cellular and molecular medicine 18: 1444-1459.

 

Kelso TW, Baumgart K, Eickhoff J, Albert T, Antrecht C, Lemcke S, Klebl B, Meisterernst M. 2014. Cyclin-dependent kinase 7 controls mRNA synthesis by affecting stability of preinitiation complexes, leading to altered gene expression, cell cycle progression, and survival of tumor cells. Molecular and cellular biology 34: 3675-3688.

 

Kutyniok M, Viehhauser A, Vogel MO, Dietz KJ, Muller C. 2014. Local and systemic transcriptional responses to crosstalk between above- and belowground herbivores in Arabidopsis thaliana. Plant signaling & behavior 9: e976113.

 

Lattrich C, Schuler S, Haring J, Skrzypczak M, Ortmann O, Treeck O. 2014. Effects of a combined treatment with tamoxifen and estrogen receptor beta agonists on human breast cancer cell lines. Archives of gynecology and obstetrics 289: 163-171.

 

Li D, Beisswenger C, Herr C, Hellberg J, Han G, Zakharkina T, Voss M, Wiewrodt R, Bohle RM, Menger MD et al. 2014. Myeloid cell RelA/p65 promotes lung cancer proliferation through Wnt/beta-catenin signaling in murine and human tumor cells. Oncogene 33: 1239-1248.

 

Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, Dresselhaus T. 2014. Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype. PLoS One 9: e96782.

 

Moeckel S, Meyer K, Leukel P, Heudorfer F, Seliger C, Stangl C, Bogdahn U, Proescholdt M, Brawanski A, Vollmann-Zwerenz A et al. 2014. Response-predictive gene expression profiling of glioma progenitor cells in vitro. PLoS One 9: e108632.

 

Müller T, Freund F, Wildhagen H, Schmid K. 2014. Targeted re-sequencing of five Douglas-fir provenances reveals population structure and putative target genes of positive selection. Tree Genetics & Genomes 11: 1-17.

 

Oelze ML, Muthuramalingam M, Vogel MO, Dietz KJ. 2014. The link between transcript regulation and de novo protein synthesis in the retrograde high light acclimation response of Arabidopsis thaliana. BMC genomics 15: 320.

 

Schmitz J, Heinrichs L, Scossa F, Fernie AR, Oelze ML, Dietz KJ, Rothbart M, Grimm B, Flugge UI, Hausler RE. 2014. The essential role of sugar metabolism in the acclimation response of Arabidopsis thaliana to high light intensities. Journal of experimental botany 65: 1619-1636.

 

Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K, Weichselgartner T, Kemena C, Stokl J, Schultner E et al. 2014. Transposable element islands facilitate adaptation to novel environments in an invasive species. Nat Commun 5: 5495.

 

Spellmann I, Rujescu D, Musil R, Giegling I, Genius J, Zill P, Dehning S, Cerovecki A, Seemuller F, Schennach R et al. 2014. Pleckstrin homology domain containing 6 protein (PLEKHA6) polymorphisms are associated with psychopathology and response to treatment in schizophrenic patients. Progress in neuro-psychopharmacology & biological psychiatry 51: 190-195.

 

Steinmetz B, Hackl H, Slabáková E, Schwarzinger I, Smějová M, Spittler A, Arbesu I, Shehata M, Souček K, Wieser R. 2014. The oncogene EVI1 enhances transcriptional and biological responses of human myeloid cells to all-trans retinoic acid. Cell Cycle 13: 2931-2943.

 

Torrado M, Franco D, Hernandez-Torres F, Crespo-Leiro MG, Iglesias-Gil C, Castro-Beiras A, Mikhailov AT. 2014. Pitx2c is reactivated in the failing myocardium and stimulates myf5 expression in cultured cardiomyocytes. PLoS One 9: e90561.

 

Vesely C, Tauber S, Sedlazeck FJ, Tajaddod M, von Haeseler A, Jantsch MF. 2014. ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain. Nucleic acids research 42: 12155-12168.

 

2013

 

Bandulik S, Tauber P, Penton D, Schweda F, Tegtmeier I, Sterner C, Lalli E, Lesage F, Hartmann M, Barhanin J et al. 2013. Severe hyperaldosteronism in neonatal Task3 potassium channel knockout mice is associated with activation of the intraadrenal renin-angiotensin system. Endocrinology 154: 2712-2722.

 

Burghardt T, Kastner J, Suleiman H, Rivera-Milla E, Stepanova N, Lottaz C, Kubitza M, Boger CA, Schmidt S, Gorski M et al. 2013. LMX1B is essential for the maintenance of differentiated podocytes in adult kidneys. Journal of the American Society of Nephrology : JASN 24: 1830-1848.

 

Fried L, Behr S, Jung K. 2013. Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli. Journal of bacteriology 195: 807-815.

 

Lettner T, Lang R, Klausegger A, Hainzl S, Bauer JW, Wally V. 2013. MMP-9 and CXCL8/IL-8 are potential therapeutic targets in epidermolysis bullosa simplex. PLoS One 8: e70123.

 

Mas S, Gasso P, Bernardo M, Lafuente A. 2013. Functional analysis of gene expression in risperidone treated cells provide new insights in molecular mechanism and new candidate genes for pharmacogenetic studies. European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 23: 329-337.

 

Mueller AM, Nassery A, Conlon H, Liu X, Jun E, Yoon BH, Cristofanilli M, Sadiq SA. 2013. Effects of intraventricular methotrexate administration on Cuprizone-induced demyelination in mice. Frontiers in molecular neuroscience 6: 34.

 

Rid R, Wagner M, Maier CJ, Hundsberger H, Hintner H, Bauer JW, Onder K. 2013. Deciphering the calcitriol-induced transcriptomic response in keratinocytes: presentation of novel target genes. Journal of molecular endocrinology 50: 131-149.

 

Rommer A, Steinmetz B, Herbst F, Hackl H, Heffeter P, Heilos D, Filipits M, Steinleitner K, Hemmati S, Herbacek I et al. 2013. EVI1 inhibits apoptosis induced by antileukemic drugs via upregulation of CDKN1A/p21/WAF in human myeloid cells. PLoS One 8: e56308.

 

Rumpler M, Wurger T, Roschger P, Zwettler E, Sturmlechner I, Altmann P, Fratzl P, Rogers MJ, Klaushofer K. 2013. Osteoclasts on bone and dentin in vitro: mechanism of trail formation and comparison of resorption behavior. Calcified tissue international 93: 526-539.

 

Schlegel G, Ringseis R, Keller J, Schwarz FJ, Windisch W, Eder K. 2013. Expression of fibroblast growth factor 21 in the liver of dairy cows in the transition period and during lactation. Journal of animal physiology and animal nutrition 97: 820-829.

 

Schmid C, Bauer S, Muller B, Bartelheimer M. 2013. Belowground neighbor perception in Arabidopsis thaliana studied by transcriptome analysis: roots of Hieracium pilosella cause biotic stress. Frontiers in plant science 4: 296.

 

Thaler R, Zwerina J, Rumpler M, Spitzer S, Gamsjaeger S, Paschalis EP, Klaushofer K, Varga F. 2013. Homocysteine induces serum amyloid A3 in osteoblasts via unlocking RGD-motifs in collagen. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 27: 446-463.

 

Treeck O, Schuler S, Haring J, Skrzypczak M, Lattrich C, Ortmann O. 2013. icb-1 Gene counteracts growth of ovarian cancer cell lines. Cancer letters 335: 441-446.

 

Walther N, Ulrich A, Vockerodt M, von Bonin F, Klapper W, Meyer K, Eberth S, Pukrop T, Spang R, Trumper L et al. 2013. Aberrant lymphocyte enhancer-binding factor 1 expression is characteristic for sporadic Burkitt's lymphoma. The American journal of pathology 182: 1092-1098.

 

Zollbrecht C, Grassl M, Fenk S, Hocherl R, Hubauer U, Reinhard W, Esslinger UB, Ebert S, Langmann T, Stark K et al. 2013. Expression pattern in human macrophages dependent on 9p21.3 coronary artery disease risk locus. Atherosclerosis 227: 244-249.

 

2012

 

Cornelius S, Traub M, Bernard C, Salzig C, Lang P, Mohlmann T. 2012. Nucleoside transport across the plasma membrane mediated by equilibrative nucleoside transporter 3 influences metabolism of Arabidopsis seedlings. Plant biology (Stuttgart, Germany) 14: 696-705.

 

Czarnecki O, Glasser C, Chen JG, Mayer KF, Grimm B. 2012. Evidence for a Contribution of ALA Synthesis to Plastid-To-Nucleus Signaling. Frontiers in plant science 3: 236.

 

Deinlein U, Weber M, Schmidt H, Rensch S, Trampczynska A, Hansen TH, Husted S, Schjoerring JK, Talke IN, Kramer U et al. 2012. Elevated nicotianamine levels in Arabidopsis halleri roots play a key role in zinc hyperaccumulation. The Plant cell 24: 708-723.

 

Genius J, Benninghoff J, Reuter N, Braun I, Giegling I, Hartmann A, Moller HJ, Rujescu D. 2012. Dysequilibrium of neuronal proliferation and apoptosis in a pharmacological animal model of psychosis. Methods (San Diego, Calif) 56: 519-527.

Hetzenecker AM, Seidl MC, Kosovac K, Herfarth H, Kellermeier S, Obermeier F, Falk W, Schoelmerich J, Hausmann M, Rogler G. 2012. Downregulation of the ubiquitin-proteasome system in normal colonic macrophages and reinduction in inflammatory bowel disease. Digestion 86: 34-47.

 

Hobi N, Ravasio A, Haller T. 2012. Interfacial stress affects rat alveolar type II cell signaling and gene expression. American journal of physiology Lung cellular and molecular physiology 303: L117-129.

 

Kraxenberger T, Fried L, Behr S, Jung K. 2012. First insights into the unexplored two-component system YehU/YehT in Escherichia coli. Journal of bacteriology 194: 4272-4284.

 

Michaelis M, Rothweiler F, Agha B, Barth S, Voges Y, Loschmann N, von Deimling A, Breitling R, Doerr HW, Rodel F et al. 2012. Human neuroblastoma cells with acquired resistance to the p53 activator RITA retain functional p53 and sensitivity to other p53 activating agents. Cell death & disease 3: e294.

 

Muller AM, Jun E, Conlon H, Sadiq SA. 2012. Cerebrospinal hepatocyte growth factor levels correlate negatively with disease activity in multiple sclerosis. Journal of neuroimmunology 251: 80-86.

 

Rosenbaum S, Ringseis R, Hillen S, Becker S, Erhardt G, Reiner G, Eder K. 2012. Genome-wide transcript profiling indicates induction of energy-generating pathways and an adaptive immune response in the liver of sows during lactation. Comparative biochemistry and physiology Part D, Genomics & proteomics 7: 370-381.

 

Schlegel G, Ringseis R, Windisch W, Schwarz FJ, Eder K. 2012. Effects of a rumen-protected mixture of conjugated linoleic acids on hepatic expression of genes involved in lipid metabolism in dairy cows. Journal of dairy science 95: 3905-3918.

 

Schmidt J, Riechers A, Stoll R, Amann T, Fink F, Spruss T, Gronwald W, Konig B, Hellerbrand C, Bosserhoff AK. 2012. Targeting melanoma metastasis and immunosuppression with a new mode of melanoma inhibitory activity (MIA) protein inhibition. PLoS One 7: e37941.

 

Treeck O, Belgutay D, Haring J, Schuler S, Lattrich C, Ortmann O. 2012. Network analysis of icb-1 gene function in human breast cancer cells. Journal of cellular biochemistry 113: 2979-2988.

 

2011

 

Karlstetter M, Lippe E, Walczak Y, Moehle C, Aslanidis A, Mirza M, Langmann T. 2011. Curcumin is a potent modulator of microglial gene expression and migration. Journal of neuroinflammation 8: 125.

 

Keller J, Ringseis R, Priebe S, Guthke R, Kluge H, Eder K. 2011. Dietary L-carnitine alters gene expression in skeletal muscle of piglets. Molecular nutrition & food research 55: 419-429.

-. 2011. Effect of L-carnitine on the hepatic transcript profile in piglets as animal model. Nutrition & metabolism 8: 76.

 

Knoblach T, Grandel B, Seiler J, Nevels M, Paulus C. 2011. Human cytomegalovirus IE1 protein elicits a type II interferon-like host cell response that depends on activated STAT1 but not interferon-gamma. PLoS pathogens 7: e1002016.

 

Mauerer A, Roesch A, Hafner C, Stempfl T, Wild P, Meyer S, Landthaler M, Vogt T. 2011. Identification of new genes associated with melanoma. Experimental dermatology 20: 502-507.

 

Schmidt K, Wies E, Neipel F. 2011. Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor 3 inhibits gamma interferon and major histocompatibility complex class II expression. Journal of virology 85: 4530-4537.

 

Spellmann I, Rujescu D, Musil R, Mayr A, Giegling I, Genius J, Zill P, Dehning S, Opgen-Rhein M, Cerovecki A et al. 2011. Homer-1 polymorphisms are associated with psychopathology and response to treatment in schizophrenic patients. Journal of psychiatric research 45: 234-241.

 

Thaler R, Agsten M, Spitzer S, Paschalis EP, Karlic H, Klaushofer K, Varga F. 2011. Homocysteine suppresses the expression of the collagen cross-linker lysyl oxidase involving IL-6, Fli1, and epigenetic DNA methylation. The Journal of biological chemistry 286: 5578-5588.

 

Thaler R, Rumpler M, Spitzer S, Klaushofer K, Varga F. 2011. Mospd1, a new player in mesenchymal versus epidermal cell differentiation. Journal of cellular physiology 226: 2505-2515.

 

Torrado M, Iglesias R, Centeno A, Lopez E, Mikhailov AT. 2011. Targeted gene-silencing reveals the functional significance of myocardin signaling in the failing heart. PLoS One 6: e26392.

 

Wanninger J, Walter R, Bauer S, Eisinger K, Schaffler A, Dorn C, Weiss TS, Hellerbrand C, Buechler C. 2011. MMP-9 activity is increased by adiponectin in primary human hepatocytes but even negatively correlates with serum adiponectin in a rodent model of non-alcoholic steatohepatitis. Experimental and molecular pathology 91: 603-607.

 

2010

 

Albert TK, Grote K, Boeing S, Meisterernst M. 2010. Basal core promoters control the equilibrium between negative cofactor 2 and preinitiation complexes in human cells. Genome biology 11: R33.

 

Dirscherl K, Karlstetter M, Ebert S, Kraus D, Hlawatsch J, Walczak Y, Moehle C, Fuchshofer R, Langmann T. 2010. Luteolin triggers global changes in the microglial transcriptome leading to a unique anti-inflammatory and neuroprotective phenotype. Journal of neuroinflammation 7: 3.

 

Hackl H, Rommer A, Konrad TA, Nassimbeni C, Wieser R. 2010. Tetracycline regulator expression alters the transcriptional program of mammalian cells. PLoS One 5: e13013.

 

Hafner C, Di Martino E, Pitt E, Stempfl T, Tomlinson D, Hartmann A, Landthaler M, Knowles M, Vogt T. 2010. FGFR3 mutation affects cell growth, apoptosis and attachment in keratinocytes. Experimental cell research 316: 2008-2016.

 

Laimer M, Kocher T, Chiocchetti A, Trost A, Lottspeich F, Richter K, Hintner H, Bauer JW, Onder K. 2010. Proteomic profiling reveals a catalogue of new candidate proteins for human skin aging. Experimental dermatology 19: 912-918.

 

Schuster P, Donhauser N, Pritschet K, Ries M, Haupt S, Kittan NA, Korn K, Schmidt B. 2010. Co-ordinated regulation of plasmacytoid dendritic cell surface receptors upon stimulation with herpes simplex virus type 1. Immunology 129: 234-247.

 

Thaler R, Spitzer S, Rumpler M, Fratzl-Zelman N, Klaushofer K, Paschalis EP, Varga F. 2010. Differential effects of homocysteine and beta aminopropionitrile on preosteoblastic MC3T3-E1 cells. Bone 46: 703-709.

 

Unfried C, Burbach G, Korf HW, von Gall C. 2010. Melatonin receptor 1-dependent gene expression in the mouse pars tuberalis as revealed by cDNA microarray analysis and in situ hybridization. Journal of pineal research 48: 148-156.

 

Vock C, Biedasek K, Boomgaarden I, Heins A, Nitz I, Doring F. 2010. ACBP knockdown leads to down-regulation of genes encoding rate-limiting enzymes in cholesterol and fatty acid metabolism. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 25: 675-686.

 

2009

 

Gruenewald C, Botella JA, Bayersdorfer F, Navarro JA, Schneuwly S. 2009. Hyperoxia-induced neurodegeneration as a tool to identify neuroprotective genes in Drosophila melanogaster. Free radical biology & medicine 46: 1668-1676.

 

Guo P, Baum M, Grando S, Ceccarelli S, Bai G, Li R, von Korff M, Varshney RK, Graner A, Valkoun J. 2009. Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of experimental botany 60: 3531-3544.

 

Hartmann A, Thieme M, Nanduri LK, Stempfl T, Moehle C, Kivisild T, Oefner PJ. 2009. Validation of microarray-based resequencing of 93 worldwide mitochondrial genomes. Human mutation 30: 115-122.

 

Lang M, Schlechtweg M, Kellermeier S, Brenmoehl J, Falk W, Scholmerich J, Herfarth H, Rogler G, Hausmann M. 2009. Gene expression profiles of mucosal fibroblasts from strictured and nonstrictured areas of patients with Crohn's disease. Inflammatory bowel diseases 15: 212-223.

 

Lutter D, Langmann T, Ugocsai P, Moehle C, Seibold E, Splettstoesser WD, Gruber P, Lang EW, Schmitz G. 2009. Analyzing time-dependent microarray data using independent component analysis derived expression modes from human macrophages infected with F. tularensis holartica. Journal of biomedical informatics 42: 605-611.

 

Nielsen C, Lippke H, Didier A, Dietrich R, Martlbauer E. 2009. Potential of deoxynivalenol to induce transcription factors in human hepatoma cells. Molecular nutrition & food research 53: 479-491.

 

Pietschmann K, Beetz S, Welte S, Martens I, Gruen J, Oberg HH, Wesch D, Kabelitz D. 2009. Toll-like receptor expression and function in subsets of human gammadelta T lymphocytes. Scandinavian journal of immunology 70: 245-255.

 

Rascle A, Neumann T, Raschta AS, Neumann A, Heining E, Kastner J, Witzgall R. 2009. The LIM-homeodomain transcription factor LMX1B regulates expression of NF-kappa B target genes. Experimental cell research 315: 76-96.

 

Riechers A, Schmidt J, Konig B, Bosserhoff AK. 2009. Heterogeneous transition metal-based fluorescence polarization (HTFP) assay for probing protein interactions. BioTechniques 47: 837-844.

 

Thieme M, Lottaz C, Niederstatter H, Parson W, Spang R, Oefner PJ. 2009. ReseqChip: automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly. BMC bioinformatics 10: 440.

 

Vadassery J, Ranf S, Drzewiecki C, Mithofer A, Mazars C, Scheel D, Lee J, Oelmuller R. 2009. A cell wall extract from the endophytic fungus Piriformospora indica promotes growth of Arabidopsis seedlings and induces intracellular calcium elevation in roots. The Plant journal : for cell and molecular biology 59: 193-206.

 

2008

 

Ebert S, Schoeberl T, Walczak Y, Stoecker K, Stempfl T, Moehle C, Weber BH, Langmann T. 2008. Chondroitin sulfate disaccharide stimulates microglia to adopt a novel regulatory phenotype. Journal of leukocyte biology 84: 736-740.

 

Hafner C, Stempfl T, Baumler W, Hohenleutner U, Landthaler M, Vogt T. 2008. Gene expression profiling of melanocytes following Q-Switched Ruby laser irradiation. Dermatology (Basel, Switzerland) 216: 6-13.

 

Hundhausen C, Boesch-Saadatmandi C, Matzner N, Lang F, Blank R, Wolffram S, Blaschek W, Rimbach G. 2008. Ochratoxin a lowers mRNA levels of genes encoding for key proteins of liver cell metabolism. Cancer genomics & proteomics 5: 319-332.

 

Lutter D, Ugocsai P, Grandl M, Orso E, Theis F, Lang EW, Schmitz G. 2008. Analyzing M-CSF dependent monocyte/macrophage differentiation: expression modes and meta-modes derived from an independent component analysis. BMC bioinformatics 9: 100.

 

Mueller AM, Pedre X, Stempfl T, Kleiter I, Couillard-Despres S, Aigner L, Giegerich G, Steinbrecher A. 2008. Novel role for SLPI in MOG-induced EAE revealed by spinal cord expression analysis. Journal of neuroinflammation 5: 20.

 

Paragh G, Schling P, Ugocsai P, Kel AE, Liebisch G, Heimerl S, Moehle C, Schiemann Y, Wegmann M, Farwick M et al. 2008. Novel sphingolipid derivatives promote keratinocyte differentiation. Experimental dermatology 17: 1004-1016.

 

Roesch A, Mueller AM, Stempfl T, Moehle C, Landthaler M, Vogt T. 2008. RBP2-H1/JARID1B is a transcriptional regulator with a tumor suppressive potential in melanoma cells. International journal of cancer Journal international du cancer 122: 1047-1057.

 

Schweikl H, Hiller KA, Eckhardt A, Bolay C, Spagnuolo G, Stempfl T, Schmalz G. 2008. Differential gene expression involved in oxidative stress response caused by triethylene glycol dimethacrylate. Biomaterials 29: 1377-1387.

 

Vock C, Gleissner M, Klapper M, Doring F. 2008. Oleate regulates genes controlled by signaling pathways of mitogen-activated protein kinase, insulin, and hypoxia. Nutrition research (New York, NY) 28: 681-689.

 

Weigelt K, Moehle C, Stempfl T, Weber B, Langmann T. 2008. An integrated workflow for analysis of ChIP-chip data. BioTechniques 45: 131-132, 134, 136 passim.

 

Zurhove K, Nakajima C, Herz J, Bock HH, May P. 2008. Gamma-secretase limits the inflammatory response through the processing of LRP1. Science signaling 1: ra15.

 

2007

 

Beier D, Hau P, Proescholdt M, Lohmeier A, Wischhusen J, Oefner PJ, Aigner L, Brawanski A, Bogdahn U, Beier CP. 2007. CD133(+) and CD133(-) glioblastoma-derived cancer stem cells show differential growth characteristics and molecular profiles. Cancer research 67: 4010-4015.

 

Ecker J, Langmann T, Moehle C, Schmitz G. 2007. Isomer specific effects of Conjugated Linoleic Acid on macrophage ABCG1 transcription by a SREBP-1c dependent mechanism. Biochemical and biophysical research communications 352: 805-811.

 

Goritz C, Thiebaut R, Tessier LH, Nieweg K, Moehle C, Buard I, Dupont JL, Schurgers LJ, Schmitz G, Pfrieger FW. 2007. Glia-induced neuronal differentiation by transcriptional regulation. Glia 55: 1108-1122.

 

Heitzer M, Eckert A, Fuhrmann M, Griesbeck C. 2007. Influence of codon bias on the expression of foreign genes in microalgae. Advances in experimental medicine and biology 616: 46-53.

 

Kiaulehn S, Voytsekh O, Fuhrmann M, Mittag M. 2007. The Presence of UG-repeat sequences in the 3'-UTRs of reporter luciferase mRNAs mediates circadian expression and can determine acrophase in Chlamydomonas reinhardtii. Journal of biological rhythms 22: 275-277.

 

Meyer S, Orso E, Schmitz G, Landthaler M, Vogt T. 2007. Lubrol-RAFTs in melanoma cells: a molecular platform for tumor-promoting ephrin-B2-integrin-beta1 interaction. The Journal of investigative dermatology 127: 1615-1621.

 

Neumeier M, Sigruener A, Eggenhofer E, Weigert J, Weiss TS, Schaeffler A, Schlitt HJ, Aslanidis C, Piso P, Langmann T et al. 2007. High molecular weight adiponectin reduces apolipoprotein B and E release in human hepatocytes. Biochemical and biophysical research communications 352: 543-548.

 

Orso E, Moehle C, Boettcher A, Szakszon K, Werner T, Langmann T, Liebisch G, Buechler C, Ritter M, Kronenberg F et al. 2007. The satiety factor apolipoprotein A-IV modulates intestinal epithelial permeability through its interaction with alpha-catenin: implications for inflammatory bowel diseases. Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme 39: 601-611.

 

Vock C, Gleissner M, Klapper M, Doring F. 2007. Identification of palmitate-regulated genes in HepG2 cells by applying microarray analysis. Biochimica et biophysica acta 1770: 1283-1288.

 

Weigelt K, Ernst W, Walczak Y, Ebert S, Loenhardt T, Klug M, Rehli M, Weber BH, Langmann T. 2007. Dap12 expression in activated microglia from retinoschisin-deficient retina and its PU.1-dependent promoter regulation. Journal of leukocyte biology 82: 1564-1574.

 

Zahn A, Moehle C, Langmann T, Ehehalt R, Autschbach F, Stremmel W, Schmitz G. 2007. Aquaporin-8 expression is reduced in ileum and induced in colon of patients with ulcerative colitis. World journal of gastroenterology : WJG 13: 1687-1695.

 

2006

 

Buettner R, Parhofer KG, Woenckhaus M, Wrede CE, Kunz-Schughart LA, Scholmerich J, Bollheimer LC. 2006. Defining high-fat-diet rat models: metabolic and molecular effects of different fat types. Journal of molecular endocrinology 36: 485-501.

 

Gebhard C, Schwarzfischer L, Pham TH, Schilling E, Klug M, Andreesen R, Rehli M. 2006. Genome-wide profiling of CpG methylation identifies novel targets of aberrant hypermethylation in myeloid leukemia. Cancer research 66: 6118-6128.

 

Grandl M, Bared SM, Liebisch G, Werner T, Barlage S, Schmitz G. 2006. E-LDL and Ox-LDL differentially regulate ceramide and cholesterol raft microdomains in human Macrophages. Cytometry Part A : the journal of the International Society for Analytical Cytology 69: 189-191.

 

Heimerl S, Moehle C, Zahn A, Boettcher A, Stremmel W, Langmann T, Schmitz G. 2006. Alterations in intestinal fatty acid metabolism in inflammatory bowel disease. Biochimica et biophysica acta 1762: 341-350.

 

Moehle C, Ackermann N, Langmann T, Aslanidis C, Kel A, Kel-Margoulis O, Schmitz-Madry A, Zahn A, Stremmel W, Schmitz G. 2006. Aberrant intestinal expression and allelic variants of mucin genes associated with inflammatory bowel disease. Journal of molecular medicine (Berlin, Germany) 84: 1055-1066.

 

Neumeier M, Weigert J, Schaffler A, Weiss TS, Schmidl C, Buttner R, Bollheimer C, Aslanidis C, Scholmerich J, Buechler C. 2006. Aldehyde oxidase 1 is highly abundant in hepatic steatosis and is downregulated by adiponectin and fenofibric acid in hepatocytes in vitro. Biochemical and biophysical research communications 350: 731-735.

 

Roesch A, Becker B, Schneider-Brachert W, Hagen I, Landthaler M, Vogt T. 2006. Re-expression of the retinoblastoma-binding protein 2-homolog 1 reveals tumor-suppressive functions in highly metastatic melanoma cells. The Journal of investigative dermatology 126: 1850-1859.

 

Vollmann A, Vornlocher HP, Stempfl T, Brockhoff G, Apfel R, Bogdahn U. 2006. Effective silencing of EGFR with RNAi demonstrates non-EGFR dependent proliferation of glioma cells. International journal of oncology 28: 1531-1542.

 

2000 - 2005

 

Moser M, Stempfl T, Li Y, Glynn P, Buttner R, Kretzschmar D. 2000. Cloning and expression of the murine sws/NTE gene. Mechanisms of development 90: 279-282.

 

Heimerl S, Langmann T, Moehle C, Mauerer R, Dean M, Beil FU, von Bergmann K, Schmitz G. 2002. Mutations in the human ATP-binding cassette transporters ABCG5 and ABCG8 in sitosterolemia. Human mutation 20: 151.

 

Langmann T, Porsch-Ozcurumez M, Heimerl S, Probst M, Moehle C, Taher M, Borsukova H, Kielar D, Kaminski WE, Dittrich-Wengenroth E et al. 2002. Identification of sterol-independent regulatory elements in the human ATP-binding cassette transporter A1 promoter: role of Sp1/3, E-box binding factors, and an oncostatin M-responsive element. The Journal of biological chemistry 277: 14443-14450.

 

Stempfl T, Vogel M, Szabo G, Wulbeck C, Liu J, Hall JC, Stanewsky R. 2002. Identification of circadian-clock-regulated enhancers and genes of Drosophila melanogaster by transposon mobilization and luciferase reporting of cyclical gene expression. Genetics 160: 571-593.

 

Kielar D, Kaminski WE, Liebisch G, Piehler A, Wenzel JJ, Mohle C, Heimerl S, Langmann T, Friedrich SO, Bottcher A et al. 2003. Adenosine triphosphate binding cassette (ABC) transporters are expressed and regulated during terminal keratinocyte differentiation: a potential role for ABCA7 in epidermal lipid reorganization. The Journal of investigative dermatology 121: 465-474.

 

Langmann T, Mauerer R, Zahn A, Moehle C, Probst M, Stremmel W, Schmitz G. 2003. Real-time reverse transcription-PCR expression profiling of the complete human ATP-binding cassette transporter superfamily in various tissues. Clinical chemistry 49: 230-238.

 

Langmann T, Schumacher C, Morham SG, Honer C, Heimerl S, Moehle C, Schmitz G. 2003. ZNF202 is inversely regulated with its target genes ABCA1 and apoE during macrophage differentiation and foam cell formation. Journal of lipid research 44: 968-977.

 

Botella JA, Ulschmid JK, Gruenewald C, Moehle C, Kretzschmar D, Becker K, Schneuwly S. 2004. The Drosophila carbonyl reductase sniffer prevents oxidative stress-induced neurodegeneration. Current biology : CB 14: 782-786.

 

Langmann T, Moehle C, Mauerer R, Scharl M, Liebisch G, Zahn A, Stremmel W, Schmitz G. 2004. Loss of detoxification in inflammatory bowel disease: dysregulation of pregnane X receptor target genes. Gastroenterology 127: 26-40.

 

Bodzioch M, Dembinska-Kiec A, Hartwich J, Lapicka-Bodzioch K, Banas A, Polus A, Grzybowska J, Wybranska I, Dulinska J, Gil D et al. 2005. The microarray expression analysis identifies BAX as a mediator of beta-carotene effects on apoptosis. Nutrition and cancer 51: 226-235.

 

Fuhrmann M, Oertel W, Berthold P, Hegemann P. 2005. Removal of mismatched bases from synthetic genes by enzymatic mismatch cleavage. Nucleic acids research 33: e58.

 

Hafner C, Meyer S, Hagen I, Becker B, Roesch A, Landthaler M, Vogt T. 2005. Ephrin-B reverse signaling induces expression of wound healing associated genes in IEC-6 intestinal epithelial cells. World journal of gastroenterology : WJG 11: 4511-4518.

 

Hafner C, Meyer S, Langmann T, Schmitz G, Bataille F, Hagen I, Becker B, Roesch A, Rogler G, Landthaler M et al. 2005. Ephrin-B2 is differentially expressed in the intestinal epithelium in Crohn's disease and contributes to accelerated epithelial wound healing in vitro. World journal of gastroenterology : WJG 11: 4024-4031.

 

Langmann T, Liebisch G, Moehle C, Schifferer R, Dayoub R, Heiduczek S, Grandl M, Dada A, Schmitz G. 2005. Gene expression profiling identifies retinoids as potent inducers of macrophage lipid efflux. Biochimica et biophysica acta 1740: 155-161.

 

Meyer S, Hafner C, Guba M, Flegel S, Geissler EK, Becker B, Koehl GE, Orso E, Landthaler M, Vogt T. 2005. Ephrin-B2 overexpression enhances integrin-mediated ECM-attachment and migration of B16 melanoma cells. International journal of oncology 27: 1197-1206.

 

Rehli M, Sulzbacher S, Pape S, Ravasi T, Wells CA, Heinz S, Sollner L, El Chartouni C, Krause SW, Steingrimsson E et al. 2005. Transcription factor Tfec contributes to the IL-4-inducible expression of a small group of genes in mouse macrophages including the granulocyte colony-stimulating factor receptor. Journal of immunology (Baltimore, Md : 1950) 174: 7111-7122.

 

Schreiter K, Hausmann M, Spoettl T, Strauch UG, Bataille F, Schoelmerich J, Herfarth H, Falk W, Rogler G. 2005. Glycoprotein (gp) 96 expression: induced during differentiation of intestinal macrophages but impaired in Crohn's disease. Gut 54: 935-943.

 

 

 

 

 

 

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