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Software

Software tools developed at the Institute of Functional Genomics


Software from the Spang Group

compdiagTools - a toolbox for microarray analysis

DCOEX - finding groups of differentially coexpressed genes

DOCVAL - Documentation by value

Guided Clustering - Combined analysis of a microarray and experimental data

JALI - Jumping Alignments

nem - Nested Effects Models

transApproxs - Transitive Approximations

TWILIGHT - Estimating the false discovery rate


Please note:

more detailed information about each tool are in preparation...


Software from the Oefner Group

ReseqChip - automates the process of resequencing using multiple local context probe

INCA - peak alignment tool, allows for a widely automated preprocessing of GCxGC-TOF-MS data


Please note:

more detailed information about each tool are in preparation...


Software from the Lottaz Group

adSplit - find annotation-driven splits

OrderedList - Similarities of ordered gene lists

SHARCGS - Short-read assembler based on robust contig extension for genomic sequencing

StAM - Structured Analysis of Microarrays


Please note:

more detailed information about each tool are in preparation...


Software from the Gronwald Group

R-script for Data Normalization of 1H-NMR Metabolite Fingerprinting Datasets (Hochrein et al, 2015)

MetaboQuant - Computational Analysis of Protein-Protein Complexes


Please note:

more detailed information about each tool are in preparation...


Software from the Engelmann Group

miRA - adaptable novel miRNA identification in plants using small RNA sequencing data [paper] [source]

aIDA - A statistical approach to virtual cellular experiments; improved causal discovery using accumulation IDA (aIDA)  [paper] [source]


Please note:

more detailed information about each tool are in preparation...


Packages, we host for friends

  1. Department of Medicine
  2. Institute for Funtional Genomics

Statistical Bioinformatics

Prof. Rainer Spang

 

Macbook
University of Regensburg
Am BioPark 9
93053 Regensburg, Germany   
Tel  +49 941 943 5054
Fax  +49 941 943 5020