www.uni-regensburg.de/physik/computational-science/index.html
Date | Lecturer | Topic |
---|---|---|
08.01. |
Michael Huttner |
Overview of internal Kubernetes Services // new Authentication System |
15.01. |
cancelled |
~ ~ ~ cancelled ~ ~ ~ |
22.01. |
Rainer Spang |
Discussion on Computer Science curriculum in the University of Regensburg |
29.01. |
cancelled |
~ ~ ~ cancelled ~ ~ ~ |
05.02. |
Julian Lorenz |
Principles of Software Engineering |
12.02 |
Rudolf Schill |
Mutual Hazard Networks |
19.02. |
Marian Schön |
|
26.02. |
Gunther Glehr |
A Story about SWATH, datasets and lasso extensions in the context of lymphoma |
05.03. |
Christian Kohler |
Open Source Software Licenses explained |
12.03. |
Stefan Hansch |
dbGaP |
19.03. |
Thorsten Rehberg |
Tutorial: Writing R and Python Extensions with Compiled Code using HPC Features (AVX2/AVX512, C++11 Threads, BLAS and Cuda GPU acceleration) |
26.03. |
Claudio Lottaz |
Interpretable Machine Learning [talk] [book (on github)] |
02.04. |
workshop |
Informatik der Zukunft (09:00 - 12:30) (Vielberth - Gebäude) |
09.04 |
Victoria-Marie Rothe |
Seminar Statistische Bioinformatik Detecting effective multi-drug combinations [talk] [computational challenge paper, Nature Biotechnology, 2014] [DIGREM paper (Zhang et al, Bioinformatics, 2018)] |
16.04 |
Easter Holiday |
~ ~ ~ cancelled ~ ~ ~ |
23.04 |
Stefan Kirsch(ITEM, Rgbg) |
Oxford Nanopore Technologies |
30.04. |
Michael Huttner |
Modern Language Design & Introduction into Rust |
07.05. |
cancelled |
~ ~ ~ cancelled ~ ~ ~ |
14.05. |
Rudolf Schill |
Introduction to Tensors |
21.05. |
Marian Schön |
Low dimensional embedding: T-SNE and UMAP |
28.05. |
Kevin Rupp |
Seminar Statistische Bioinformatik A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory [talk] [paper] |
04.06. |
Christoph Kopp |
Seminar Statistische Bioinformatik RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome [talk] [paper] |
11.06. |
Pentecost |
~ ~ ~ cancelled ~ ~ ~ |
18.06. |
Martina Häckl |
Seminar Statistische Bioinformatik DiPhiSeq: Robust comparison of expression levels on RNA-Seq data with large sample sizes [talk] [paper] |
25.06. |
Sibylle Wilfling |
Seminar Statistische Bioinformatik Topconfects: a package for confident effect sizes in differential expression analysis provides a more biologically useful ranked gene list. [talk] [paper] |
02.07. |
cancelled |
~ ~ ~ cancelled ~ ~ ~ |
05.07. (Fr !) |
Stefan Bentink |
Guest Speaker (former PhD student in Rainer Spangs' group) |
09.07. |
Victoria-Marie Rothe |
Nucleosome Dynamics during the Erythrocytic Cycle of Plasmodium Falciparum |
16.07. |
cancelled |
Symposium - Biomolecular Imaging Meets Immuno-Oncology |
23.07. |
Max Pichler |
Machine Learning can infer trait matching and predict species interactions in ecological networks |
30.07. |
Daniel Grünbaum |
Non-negative Matrix Factorization for the Analysis of Wafer Test Data |
01.08. - 16.09. |
Summer Break |
~ ~ ~ cancelled ~ ~ ~ |
17.09. |
Marian Schön |
Coding Guidelines for Spang-Lab-Projects |
24.09 |
Hike Weltenburg |
~ ~ ~ cancelled ~ ~ ~ |
01.10 |
Gunther Glehr(10:00 s.t) |
Flow Cytometry - Principles, Challenges, Algorithms |
08.10. |
cancelled |
due to lecture " Computational Statistics für Physiker und Bioinformatiker" by Michael Altenbuchinger, PhD |
15.10 |
Claudio Lottaz |
Excerpts from the Code of Ethics and Professional Conduct by the ACM [paper] [talk] |
22.10. |
Christian Kohler |
Let's Encrypt Certificates For Docker Container - The Smart Way |
29.10. |
Jakob Simeth |
Cell Prototype Selection for DTD |
05.11. |
Michael Huttner |
L-Patho: Preprocessing huge images for deep learning |
12.11. |
Johannes FalkMaria Attenberger |
Bachelorthesis: Explorative Analysis of Lymphoma DNA Methylation Data using Digital Tissue Deconvolution Bachelorthesis:Validating DTD Immune Cell Estimations via Survival Analyses in Lymphoma |
19.11. |
Rudi Schill |
References: Tensors and Latent Variable Models Hand-waving and Interpretive Dance: An Introductory Course on Tensor Networks A literature survey of low-rank tensor approximation techniques |
26.11. |
Marian Schön |
Intratumor heterogeneity of nodal B cell lymphomas |
03.12.(09:30) |
Felix Gottschlich |
Seminar Algorithmische Bioinformatik A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer [paper] [talk] |
03.12.(10:15) |
Julian Lorenz |
Seminar Algorithmische Bioinformatik A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads [paper] [talk] |
10.12.(09:30) |
Marcel Mück |
Seminar Algorithmische Bioinformatik Long-read amplicon denoising [paper] |
10.12.(10:15) |
Johannes Falk |
Seminar Algorithmische Bioinformatik Hercules: a profile HMM-based hybrid error correction algorithm for long reads [paper] |
17.12.(09:30) |
Martina Häckl |
Seminar Algorithmische Bioinformatik Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing [paper]
|
17.12.(10:15) |
Sibylle Wilfling |
Seminar Algorithmische Bioinformatik Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation [paper]
|
14.01.2020(09:30) |
Andreas Lösch |
Seminar Algorithmische Bioinformatik Race in a genome: long read sequencing, ethnicity-specific reference genomes and the shifting horizon of race [paper] |
14.01.2020(10:15) |
Robert Bosek |
Seminar Algorithmische Bioinformatik High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution [paper] |
21.01.2020 |
Rainer Spang |
|
28.01.2020 |
Gunther Glehr |
|
04.02.2020 |
Kevin Rupp |
|
11.02.2020 |
cancelled |
~ ~ ~ Microarray Analysis Coures ~ ~ ~ |
18.02.2020 |
Christoph Kopp |
|
25.02.2020 |
Victoria-Marie Rothe |
Master Thesis talk |
03.03.2020 |
Claudio Lottaz |
|
10.03.2020 |
Christian Kohler |
|
17.03.2020 |
Michael Huttner |
|
24.03.2020 |
Rudi Schill |
|
31.03.2020 |
Marian Schön |
|
07.04.2020 |
Easter |
|
14.04.2020 |
Easter |
Information and material for the microarray workshop
Lecture | Practical | |
Room | check information in VVZ #57046 | check information in VVZ #57046 |
Tutor | Rainer Spang |
The workshop provides an introduction to the analysis of genomic data. The analysis of microarray data sets is practiced using the statistical software R and Bioconductor.
Lecture | Mo-Fr | 10:00h - 12:00h (st) |
Practical | Mo-Fr | 13:00h - 18:00h (st) |
Day | Lecture | Practical |
1 | Introduction | A gentle Introduction into R |
2 | Normalization | Quality Control and Normalization |
3 | Screening | Differential Geneexpressionanalysis |
4 | Clustering | |
5 | Classification | Classification |