Go to content
UR Home

2017

 Statistical Bioinformatics - JOURNAL CLUB [2017]



Date Lecturer Topic

10.01.        

Farhad            

Statistical Analysis of label-free SWATH-MS data

17.01.

e:Med

~ ~ ~ consortium meeting ~ ~ ~

24.01

Master Seminar

Paul Heinrich

STAR: ultrafast universal RNA_seq aligner

[talk] [paper]       

31.01.

Master Seminar

~ cancelled due to icy weather conditions ~

07.02.

Master Seminar

(1) Gunther Glehr

Sailfish enables alignment-free isoform quantification fom RNA-seq reads using lightweight algorithms [talk] [paper]

(2) Michael Huttner

Near-optimal probabilistic RNA-seq quantification [talk] [paper]

14.02

Rainer

 ~ ~ ~ Microarray course ~ ~ ~

21.02

Julia

Inferring species interactions from co-occurrence data with Markov networks [paper]

18.02

Nick

3rd Generation Sequencing Methods

07.03

Michael G

Cancer progression and metastasis in the BALB-neuT breast cancer mouse model

14.03.

Michael A

Reference point insensitive molecular data analysis

21.03.

~ cancelled ~

~ cancelled ~

28.03.

Franziska

Screen Marker Genes for Cell Deconvolution

04.04.

Thorsten

zeroSum vignette

11.04.

Easter Break

~ ~ ~ cancelled ~ ~ ~

18.04.

Easter Break

~ ~ ~ cancelled ~ ~ ~

25.04.

Claudio

Feasibility of sample size calculation for RNA-seq studies [paper]

02.05.

Rainer

~ cancelled due to RECOMB attendance ~

09.05

Paula

*.fq quality assessment and filtering

16.05.

Christian

 ~ cancelled ~

23.05.

Christian

3rd Generation Lymmml ing

30.05.

Farhad

Residual Diagnostics in Label-free proteomics

06.06.

Pentecost

~ ~ ~ cancelled ~ ~ ~

13.06.

Timo Itzel

...

20.06.

FOR2127

~ ~ ~ meeting Forschergruppe ~ ~ ~

27.06.

Nick

RNA-Seq pipeline

04.07.

Master seminar

Paul Heinrich

Quick calculation for sample size while controlling false discovery rate with application to microarray analysis [paper] [talk]

11.07.

Master seminar

Gunther Glehr

RNASeqPowerCalculator: Power analysis and sample size estimation for RNA-seq differential expression [paper] [talk]

18.07.

Master seminar

Marian Schoen

PROPER: comprehensive power evaluation for differential expression using RNA-seq [paper] [talk]

25.07.

Michael Huttner           

Modern cryptography in the lyra app

01.08.

Master seminar

Markus Eppelsheimer

Scotty: a web tool for designing RNA-seq experiments to measure differential gene expression [paper] [talk]

05.09.

Alexandra Holler

Methylation patterns in the BALB-neuT breast cancer mouse model

12.09.

Anna Kuhn

Detection of copy number variations in the human genome

19.09.

Rudi Schill

General Markov Models of Tumor Progression

26.09.

Martin Fahrenberger

Comparative Analysis of RNA Expression in five Anopheline Mosquito Species, with focus on the reproductive system

03.10.

German Unity  Day      

~ ~ ~ cancelled ~ ~ ~

05.10.

Franziska

Digital Cell Deconvolution

10.10.

Rainer

~ ~ ~ Microarray course ~ ~ ~

17.10.

cancelled

~ ~ ~ cancelled ~ ~ ~

24.10.

Michael

Estimating immune cell content of tumor tissue

31.10.

Reformation Day

~ ~ ~ cancelled ~ ~ ~

07.11.

Thorsten

Cox Regression with the zeroSum package

14.11.

Claudio

RNA-seq and microarray analyses show opposing results for alternative splicing in patients

21.11.

e:Med

~ ~ ~ consortium meeting ~ ~ ~

28.11.

Rainer

05.12.

Christian

Thoughts on how to standardize the inhouse analysis workflow of NanoString nCounter data

12.12.

Farhad

Residual Diagnostics in label-free proteomics

19.12.

Master seminar

Marian Schön

COSINE: non-seeding-method for mapping long noisy sequences [paper] [talk]

19.12.

Lab report

Florian Hirsch

Spike-in species for Arabidopsis thaliana


  1. Department of Medicine
  2. Institute of Functional Genomics