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DCOEX

Finding groups of differentially coexpressed genes

An algorithm for finding groups of genes which are differentially coexpressed between two phenotypically distinct types of samples.

dcoex

dcoex is a tool to find groups of differentially coexpressed genes between two phenotypically distinct types of samples. It is an implementation of the algorithm described in:

Publication

Finding disease specific alterations in the coexpression of genes

Dennis Kostka and Rainer Spang

Bioinformatics 20(Suppl. 1), 2004: i194-i199 (Proceedings of ISMB 2004).

[ PMID: 15262799 | doi:10.1093/bioinformatics/bth909 | erratum ]

Download

You can download the C sources here (tared and gzipped) and use them according to the GPL. For the program to compile you should have the GNU Scientific Library installed. For more details see the file README.txt in the tarball.

→ dcoex.tgz    [last updated at: 11 /10/2004]

An R package is available here. The GNU scientific library is not needed for the R package.

R source package


  1. Department of Medicine
  2. Institute of Functional Genomics