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• "A Lagrangian relaxation approach for the multiple sequence alignment problem", Althaus, Canzar, 2008

  Publication

  We present a branch-and-bound (bb) algorithm for the multiple sequence alignment problem (MSA), one of the most important problems in computational...

  Publication on epub.uni-regensburg.de: "A Lagrangian relaxation approach for the multiple sequence alignment problem" (external link, opens in a new window)

• "A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem", Althaus, Canzar, 2007

  Publication

  We present a branch-and-bound (bb) algorithm for the multiple sequence alignment problem (MSA), one of the most important problems in computational...

  Publication on epub.uni-regensburg.de: "A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem" (external link, opens in a new window)

• "Approximating the Interval Constrained Coloring Problem", Althaus, Canzar, Elbassioni, Karrenbauer, Mestre, 2008

  Publication

  We consider the interval constrained coloring problem, which appears in the interpretation of experimental data in biochemistry. Monitoring...

  Publication on epub.uni-regensburg.de: "Approximating the Interval Constrained Coloring Problem" (external link, opens in a new window)

• "GAGE-B: an evaluation of genome assemblers for bacterial organisms", Magoc, Pabinger, Canzar, Liu, Su, Puiu, Tallon, Salzberg, 2013

  Publication

  Motivation: A large and rapidly growing number of bacterial organisms have been sequenced by the newest sequencing technologies. Cheaper and faster...

  Publication on epub.uni-regensburg.de: "GAGE-B: an evaluation of genome assemblers for bacterial organisms" (external link, opens in a new window)

• "Charge Group Partitioning in Biomolecular Simulation", Canzar, El-Kebir, Pool, Elbassioni, Malde, Mark, Geerke, Stougie, Klau, 2013

  Publication

  Molecular simulation techniques are increasingly being used to study biomolecular systems at an atomic level. Such simulations rely on empirical force...

  Publication on epub.uni-regensburg.de: "Charge Group Partitioning in Biomolecular Simulation" (external link, opens in a new window)

• "The Generalized Robinson-Foulds Metric", Böcker, Canzar, Klau, 2013

  Publication

  The Robinson-Foulds (RF) metric is arguably the most widely used measure of phylogenetic tree similarity, despite its well-known shortcomings: For...

  Publication on epub.uni-regensburg.de: "The Generalized Robinson-Foulds Metric" (external link, opens in a new window)

• "Solving the Minimum String Cover Problem", Canzar, Marschall, Rahmann, Schwiegelshohn, 2013

  Publication

  A string cover C of a set of strings S is a set of substrings from S such that every string in S can be written as a concatenation of the strings in...

  Publication on epub.uni-regensburg.de: "Solving the Minimum String Cover Problem" (external link, opens in a new window)

• "Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data", Chakraborty, Canzar, Marschall, Schulz, 2018

  Publication

  Measuring nucleosome positioning in cells is crucial for the analysis of epigenetic gene regulation. Reconstruction of nucleosome profiles of...

  Publication on epub.uni-regensburg.de: "Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data" (external link, opens in a new window)

• "Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter", Kuang, Canzar, 2018

  Publication

  Alternative splicing increases the functional complexity of a genome by generating multiple isoforms and potentially proteins from the same gene. Vast...

  Publication on epub.uni-regensburg.de: "Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter" (external link, opens in a new window)

• "Short Read Mapping: An Algorithmic Tour", Canzar, Salzberg, 2017

  Publication

  Ultra-high-throughput next-generation sequencing (NGS) technology allows us to determine the sequence of nucleotides of many millions of DNA molecules...

  Publication on epub.uni-regensburg.de: "Short Read Mapping: An Algorithmic Tour" (external link, opens in a new window)